Sample Report
- Run name
- 880583b7a124bad7a11453ffd126fe
- Sample name
- Sample 30X
- Created on
- 2023-10-19 05:51
Trimmed Reads
Base Quality By Position
Ambiguous bases are ignored for the purposes of positional base quality ranges
Mean Base Quality by Position
Read Length Distribution
Read Quality Distribution
%GC Content
Read Quality by %GC Content
Ambiguous Base Content by Position
Base Content by Position
Adapter Content by Position
Mapping Metrics
Deduplication
Read MAPQs
Fragment Length
Mapped Coverage to Primary Contigs
Mapped Coverage to Unplaced and Alternate Contigs
Coverage Metrics
WGS Coverage Distribution
Minimum WGS Coverage Distribution
Aneuploidy Results (chr1-12)
Aneuploidy Results (chr13-22,X,Y)
Variant Statistics
Structural Variant Metrics
Copy Number Variant Metrics
Coverage Uniformity is an auto-correlation metric calculated from coverage levels of adjacent regions. Values will vary by library, but should generally be <0.4 for Germline WGS data
CNV Ratios
Regions of Homozygosity (chr1-12)
The values in the tables below are ratios of the number of heterozygous to homozygous SNVs for a given chromosome. Values less than 0.2 are colored in red, indicating a likely Region of Homozygosity.
Regions of Homozygosity (chr13-22,X,Y)
HLA Typer Results
Repeat Expansion
Targeted Caller Summary
Common Repeat Expansions
The values in the tables below are the number of repeat units for the specified motif in the given gene. Values separated by a forward slash represent the number of repeats for both alleles.